SNP Profiles matching IMC 2

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	GG	CC	AA	TT
1._IMC_2	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	GG	CC	AA	TT
2._IMC_2	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	GG	CC	AA	TT
3._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	GG	CC	AA	TT
4._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	GG	CC	AA	TT
5._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	GG	CC	AA	TT
6._IMC_2	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	_	CC	AA	TT
7._GC-04-042-3-06	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	_	CC	AA	TT
8._RUQ_828	_	AG	GG	TT	_	_	_	TT	_	_	_	CC	AA	_
9._RUQ_828	CC	AG	GG	TT	CT	CC	TT	TT	CC	AA	GG	CC	AA	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
1._IMC_2	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
2._IMC_2	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
3._GC-04-042-3-06	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
4._GC-04-042-3-06	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
5._GC-04-042-3-06	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
6._IMC_2	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
7._GC-04-042-3-06	AT	GG	CC	TT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG
8._RUQ_828	_	_	_	TT	CC	GT	_	CC	AC	CG	GT	CC	AC	AG
9._RUQ_828	AT	GG	CC	CT	CC	GT	AA	CC	AC	GG	GT	CC	AC	AG

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
1._IMC_2	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
2._IMC_2	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
3._GC-04-042-3-06	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
4._GC-04-042-3-06	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
5._GC-04-042-3-06	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
6._IMC_2	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
7._GC-04-042-3-06	GG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
8._RUQ_828	_	AT	CT	AG	CC	AC	CT	TT	CC	_	_	X_X	X_X	X_X
9._RUQ_828	AG	AT	CT	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X

Input profile: IMC_2

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Mars Center for Cocoa Science, Brazil

Location: 4306 4 > FP

Dapeng Zhang, 2016

1._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 5 > FP

Dapeng Zhang, 2016

2._IMC_2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 8

Dapeng Zhang, 2016

3._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

4._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

5._IMC_2 GC-04-042-3-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

6._IMC_2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4306 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_2 GC-04-042-3-06

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._IMC_2 RUQ_828

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

9._IMC_2 RUQ_828

97.4 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25